Genome Meta Information: Streptococcus mutans U2B (GCA_000340175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000340175.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans U2B | ||
| Strain or Isolate | U2B | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina GAII single end reads | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,960,144 (bp) | ||
| GC Percentage | 36.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/340/175/GCA_000340175.1_ASM34017v1 | ||
| CDS | 1853 | ||
| Genes | 1910 | ||
| mRNA | 1910 | ||
| misc RNA | 25 | ||
| rRNA | 3 | ||
| tRNA | 28 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.35 % | ||
| CheckM Completeness | 98.56 % | ||
| CheckM Contamination | 0.79 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM34017v1 |
| GenBank Assembly Accession | GCA_000340175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000340175.1 [NCBI] |
| BioSample | SAMN02428989 [NCBI] |
| BioProject | PRJNA49851 [NCBI] |
| Submitter | Cornell University |
| Submission Date | 2013-12-02T10:55:28.767 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AGWE01 |
| NCBI TaxID | 857106 |
| Isolation Source | |
| Geo Location | Turkey |
