Taxon Table | Genome Table
Genome Meta Information:
Campylobacter
showae
CC57C (GCA_000344295.2)
| HOMD Genome-ID |
GCA_000344295.2
|
| HOMD Taxon-ID |
HMT-0763
|
| Species Name (in use by HOMD) |
Campylobacter showae
|
| Organism Name (as deposited) |
HMT-763 Campylobacter showae CC57C
|
| Strain or Isolate |
CC57C
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A;
s__Campylobacter_A showae_B |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
200
|
| Contigs |
Number of Contigs: 273
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,187,351 (bp) |
| GC Percentage |
45.36
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/344/295/GCA_000344295.2_velvet
|
| CDS |
2181
|
| Genes |
2219
|
| mRNA |
2219
|
| misc RNA |
5
|
| rRNA |
2
|
| tRNA |
30
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
92.81 %
|
| CheckM Completeness |
91.1 %
|
| CheckM Contamination |
6.2 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
velvet
|
| GenBank Assembly Accession |
GCA_000344295.2
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000344295.2
[NCBI]
|
| BioSample |
SAMN02469328
[NCBI]
|
| BioProject |
PRJNA189774
[NCBI]
|
| Submitter |
BC Cancer Agency
|
| Submission Date |
2013-12-19T13:00:58.523
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
AOTD01
|
| NCBI TaxID |
1073353
|
| Isolation Source |
colon adenocarcinoma surgical section
|
| Geo Location |
|
