Genome Meta Information: Streptococcus mutans 5DC8 (GCA_000347795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000347795.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans 5DC8 | ||
| Strain or Isolate | 5DC8 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,010,949 (bp) | ||
| GC Percentage | 36.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/347/795/GCA_000347795.1_5dc8_V1 | ||
| CDS | 1871 | ||
| Genes | 1980 | ||
| mRNA | 1980 | ||
| misc RNA | 28 | ||
| rRNA | 15 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.33 % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 5dc8_V1 |
| GenBank Assembly Accession | GCA_000347795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000347795.1 [NCBI] |
| BioSample | SAMN02469959 [NCBI] |
| BioProject | PRJNA179252 [NCBI] |
| Submitter | Institute of Bioprocess and Biosystems Engineering |
| Submission Date | 2013-12-19T13:09:45.880 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AOBX01 |
| NCBI TaxID | 1257037 |
| Isolation Source | root caries |
| Geo Location | United Kingdom:London |
