Genome Meta Information: Veillonella atypica HPA0037 (GCA_000411535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000411535.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica HPA0037 | ||
| Strain or Isolate | HPA0037 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 288 | ||
| Contigs |
|
||
| Total Sequence Length | 2,071,607 (bp) | ||
| GC Percentage | 39.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/411/535/GCA_000411535.1_Veil_sp_HPA0037_V1 | ||
| CDS | 1854 | ||
| Genes | 1930 | ||
| mRNA | 1930 | ||
| misc RNA | 18 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Veil_sp_HPA0037_V1 |
| GenBank Assembly Accession | GCA_000411535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000411535.1 [NCBI] |
| BioSample | SAMN02596981 [NCBI] |
| BioProject | PRJNA169494 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:49:01.993 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ATCG01 |
| NCBI TaxID | 1203593 |
| Isolation Source | |
| Geo Location | |
