Genome Meta Information: Treponema vincentii F0403 (GCA_000412995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000412995.1 | ||
| HOMD Taxon-ID | HMT-0029 | ||
| Species Name (in use by HOMD) | Treponema vincentii | ||
| Organism Name (as deposited) | HMT-029 Treponema vincentii clade-029 F0403 | ||
| Strain or Isolate | F0403 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema vincentii |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 142 | ||
| Contigs |
|
||
| Total Sequence Length | 2,693,493 (bp) | ||
| GC Percentage | 45.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/412/995/GCA_000412995.1_Trep_vinc_F0403_V1 | ||
| CDS | 2435 | ||
| Genes | 2496 | ||
| mRNA | 0 | ||
| misc RNA | 4 | ||
| rRNA | 8 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.74 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Trep_vinc_F0403_V1 |
| GenBank Assembly Accession | GCA_000412995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000412995.1 [NCBI] |
| BioSample | SAMN02596984 [NCBI] |
| BioProject | PRJNA169493 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:49:02.160 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ATFC01 |
| NCBI TaxID | 1125702 |
| Isolation Source | |
| Geo Location | |
