Genome Meta Information: Treponema socranskii ATCC 35535 (GCA_000413015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000413015.1 | ||
| HOMD Taxon-ID | HMT-0440 | ||
| Species Name (in use by HOMD) | Treponema socranskii | ||
| Organism Name (as deposited) | HMT-440 Treponema socranskii subsp. paredis ATCC 35535 | ||
| Strain or Isolate | ATCC 35535 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D; s__Treponema_D paredis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 281 | ||
| Contigs |
|
||
| Total Sequence Length | 2,742,149 (bp) | ||
| GC Percentage | 48.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/015/GCA_000413015.1_Trep_socr_subsp_paredis_ATCC_35535_V1 | ||
| CDS | 2423 | ||
| Genes | 2483 | ||
| mRNA | 0 | ||
| misc RNA | 2 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.78 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Trep_socr_subsp_paredis_ATCC_3 |
| GenBank Assembly Accession | GCA_000413015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000413015.1 [NCBI] |
| BioSample | SAMN02596985 [NCBI] |
| BioProject | PRJNA169492 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:49:02.270 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ATFD01 |
| NCBI TaxID | 1125701 |
| Isolation Source | |
| Geo Location | |
