Genome Meta Information: Streptococcus salivarius HSISS4 (GCA_000448685.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000448685.2 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius HSISS4 | ||
| Strain or Isolate | HSISS4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_E |
||
| Sequencing Technology | Illumina HiSeq; PacBio | ||
| Genome Coverage | 144 | ||
| Contigs |
|
||
| Total Sequence Length | 2,100,988 (bp) | ||
| GC Percentage | 40.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/448/685/GCA_000448685.2_ASM44868v2 | ||
| CDS | 1876 | ||
| Genes | 1999 | ||
| mRNA | 1999 | ||
| misc RNA | 36 | ||
| rRNA | 18 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.06 % | ||
| CheckM Completeness | 97.08 % | ||
| CheckM Contamination | 1.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM44868v2 |
| GenBank Assembly Accession | GCA_000448685.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000448685.2 [NCBI] |
| BioSample | SAMN02471219 [NCBI] |
| BioProject | PRJNA196127 [NCBI] |
| Submitter | Top Institute Food and Nutrition (TIFN) |
| Submission Date | 2013-12-19T13:34:52.666 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1304 |
| Isolation Source | ileostomy effluent evening sample obtained from a 79 year-old male ileostomist p |
| Geo Location | Netherlands |
