Genome Meta Information: Veillonella parvula HSIVP1 (GCA_000448705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000448705.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula HSIVP1 | ||
| Strain or Isolate | HSIVP1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_A |
||
| Sequencing Technology | 454; Illumina HiSeq | ||
| Genome Coverage | 476 | ||
| Contigs |
|
||
| Total Sequence Length | 2,177,985 (bp) | ||
| GC Percentage | 39.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/448/705/GCA_000448705.1_HSIVP1_1.0 | ||
| CDS | 2036 | ||
| Genes | 2110 | ||
| mRNA | 2110 | ||
| misc RNA | 20 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.47 % | ||
| CheckM Completeness | 89.88 % | ||
| CheckM Contamination | 1.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | HSIVP1_1.0 |
| GenBank Assembly Accession | GCA_000448705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000448705.1 [NCBI] |
| BioSample | SAMN02471223 [NCBI] |
| BioProject | PRJNA196131 [NCBI] |
| Submitter | Top Institute Food and Nutrition (TIFN) |
| Submission Date | 2013-12-19T13:34:52.873 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | ASKE01 |
| NCBI TaxID | 1316254 |
| Isolation Source | ileostomy effluent evening sample obtained from a 79 year-old male ileostomist p |
| Geo Location | Netherlands |
