Genome Meta Information: Variovorax paradoxus B4 (GCA_000463015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000463015.1 | ||
| HOMD Taxon-ID | HMT-0717 | ||
| Species Name (in use by HOMD) | Variovorax paradoxus | ||
| Organism Name (as deposited) | HMT-717 Variovorax paradoxus B4 | ||
| Strain or Isolate | B4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax; s__Variovorax paradoxus_E |
||
| Sequencing Technology | Sanger dideoxy sequencing; 454 | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 7,148,516 (bp) | ||
| GC Percentage | 67.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/015/GCA_000463015.1_ASM46301v1 | ||
| CDS | 6688 | ||
| Genes | 6790 | ||
| mRNA | 6790 | ||
| misc RNA | 38 | ||
| rRNA | 6 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.66 % | ||
| CheckM Completeness | 99.57 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46301v1 |
| GenBank Assembly Accession | GCA_000463015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000463015.1 [NCBI] |
| BioSample | SAMN02603275 [NCBI] |
| BioProject | PRJNA178088 [NCBI] |
| Submitter | Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory |
| Submission Date | 2014-01-30T11:19:45.983 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1246301 |
| Isolation Source | |
| Geo Location | |
