Genome Meta Information: Treponema socranskii VPI DR56BR1116 (GCA_000464455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000464455.1 | ||
| HOMD Taxon-ID | HMT-0769 | ||
| Species Name (in use by HOMD) | Treponema socranskii | ||
| Organism Name (as deposited) | HMT-769 Treponema socranskii subsp. socranskii VPI DR56BR1116 | ||
| Strain or Isolate | VPI DR56BR1116 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D; s__Treponema_D socranskii |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 32 | ||
| Contigs |
|
||
| Total Sequence Length | 2,804,628 (bp) | ||
| GC Percentage | 49.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/464/455/GCA_000464455.1_TrepsocrDR56BR1116v1.0 | ||
| CDS | 2484 | ||
| Genes | 2537 | ||
| mRNA | 0 | ||
| misc RNA | 3 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.97 % | ||
| CheckM Completeness | 98.7 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | TrepsocrDR56BR1116v1.0 |
| GenBank Assembly Accession | GCA_000464455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000464455.1 [NCBI] |
| BioSample | SAMN00792340 [NCBI] |
| BioProject | PRJNA78911 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2012-02-24T11:44:02.657 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AUZJ01 |
| NCBI TaxID | 1125725 |
| Isolation Source | |
| Geo Location | |
