Genome Meta Information: Aggregatibacter sp. HMT-458 W10330 (GCA_000466335.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000466335.1 | ||
| HOMD Taxon-ID | HMT-458 | ||
| Species Name (in use by HOMD) | Aggregatibacter sp. HMT-458 | ||
| Organism Name (as deposited) | HMT-458 Aggregatibacter sp. HMT-458 W10330 | ||
| Strain or Isolate | W10330 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter sp000466335 |
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| Sequencing Technology | Illumina | ||
| Genome Coverage | 198.0x | ||
| Contigs |
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| Total Sequence Length | 2,016,624 (bp) | ||
| GC Percentage | 43.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/466/335/GCA_000466335.1_ASM46633v1 | ||
| CDS | 1864 | ||
| Genes | 1960 | ||
| mRNA | 1960 | ||
| misc RNA | 46 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46633v1 |
| GenBank Assembly Accession | GCA_000466335.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000466335.1 [NCBI] |
| BioSample | SAMN02436891 [NCBI] |
| BioProject | PRJNA198875 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:58.787 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWSH01 |
| NCBI TaxID | 1321772 |
| Isolation Source | oral cavity - mouth |
| Geo Location | |
