Genome Meta Information: Streptococcus sobrinus W1703 (GCA_000467915.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000467915.2 | ||
| HOMD Taxon-ID | HMT-0768 | ||
| Species Name (in use by HOMD) | Streptococcus sobrinus | ||
| Organism Name (as deposited) | HMT-768 Streptococcus sobrinus W1703 | ||
| Strain or Isolate | W1703 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sobrinus |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 188 | ||
| Contigs |
|
||
| Total Sequence Length | 2,112,484 (bp) | ||
| GC Percentage | 43.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/467/915/GCA_000467915.2_ASM46791v2 | ||
| CDS | 1960 | ||
| Genes | 2033 | ||
| mRNA | 2033 | ||
| misc RNA | 31 | ||
| rRNA | 3 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.8 % | ||
| CheckM Completeness | 98.55 % | ||
| CheckM Contamination | 0.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46791v2 |
| GenBank Assembly Accession | GCA_000467915.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000467915.2 [NCBI] |
| BioSample | SAMN02436725 [NCBI] |
| BioProject | PRJNA173941 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:49.180 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVA01 |
| NCBI TaxID | 1227275 |
| Isolation Source | dental plaque biofilm of the third molar tooth of an individual diagnosed with p |
| Geo Location | United Kingdom |
