Genome Meta Information: Treponema lecithinolyticum ATCC 700332 (GCA_000468055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000468055.1 | ||
| HOMD Taxon-ID | HMT-0653 | ||
| Species Name (in use by HOMD) | Treponema lecithinolyticum | ||
| Organism Name (as deposited) | HMT-653 Treponema lecithinolyticum ATCC 700332 | ||
| Strain or Isolate | ATCC 700332 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_C; s__Treponema_C lecithinolyticum |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 170 | ||
| Contigs |
|
||
| Total Sequence Length | 2,340,885 (bp) | ||
| GC Percentage | 43.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/055/GCA_000468055.1_ASM46805v1 | ||
| CDS | 2041 | ||
| Genes | 2092 | ||
| mRNA | 2092 | ||
| misc RNA | 3 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.82 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46805v1 |
| GenBank Assembly Accession | GCA_000468055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000468055.1 [NCBI] |
| BioSample | SAMN02436727 [NCBI] |
| BioProject | PRJNA198879 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:49.310 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVH01 |
| NCBI TaxID | 1321815 |
| Isolation Source | oral cavity- mouth |
| Geo Location | |
