Genome Meta Information: Treponema socranskii ATCC 35536 (GCA_000468115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000468115.1 | ||
| HOMD Taxon-ID | HMT-0769 | ||
| Species Name (in use by HOMD) | Treponema socranskii | ||
| Organism Name (as deposited) | HMT-769 Treponema socranskii subsp. socranskii ATCC 35536 | ||
| Strain or Isolate | ATCC 35536 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D; s__Treponema_D socranskii |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 85 | ||
| Contigs |
|
||
| Total Sequence Length | 2,826,695 (bp) | ||
| GC Percentage | 49.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/468/115/GCA_000468115.1_TsocrATCC35536v1.0 | ||
| CDS | 2504 | ||
| Genes | 2557 | ||
| mRNA | 0 | ||
| misc RNA | 3 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.24 % | ||
| CheckM Completeness | 98.12 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | TsocrATCC35536v1.0 |
| GenBank Assembly Accession | GCA_000468115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000468115.1 [NCBI] |
| BioSample | SAMN02344580 [NCBI] |
| BioProject | PRJNA216958 [NCBI] |
| Submitter | The J. Craig Venter Institute |
| Submission Date | 2013-09-04T11:05:15.103 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AVQI01 |
| NCBI TaxID | 1125725 |
| Isolation Source | |
| Geo Location | |
