Genome Meta Information: Leptotrichia sp. HMT-879 F0557 (GCA_000469385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000469385.1 | ||
| HOMD Taxon-ID | HMT-0879 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-879 | ||
| Organism Name (as deposited) | HMT-879 Leptotrichia sp. HMT-879 F0557 | ||
| Strain or Isolate | F0557 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia sp000469385 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 165 | ||
| Contigs |
|
||
| Total Sequence Length | 2,415,750 (bp) | ||
| GC Percentage | 29.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/469/385/GCA_000469385.1_ASM46938v1 | ||
| CDS | 2279 | ||
| Genes | 2324 | ||
| mRNA | 2324 | ||
| misc RNA | 16 | ||
| rRNA | 3 | ||
| tRNA | 25 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.81 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM46938v1 |
| GenBank Assembly Accession | GCA_000469385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000469385.1 [NCBI] |
| BioSample | SAMN02436883 [NCBI] |
| BioProject | PRJNA173936 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:03:58.187 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AWVL01 |
| NCBI TaxID | 1227268 |
| Isolation Source | subgingival plaque biofilm |
| Geo Location | USA |
