Genome Meta Information: Streptococcus mutans PKUSS-HG01 (GCA_000496535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000496535.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans PKUSS-HG01 | ||
| Strain or Isolate | PKUSS-HG01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,002,612 (bp) | ||
| GC Percentage | 36.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/496/535/GCA_000496535.1_Streptococcus_mutans_PKUSS-HG01 | ||
| CDS | 1895 | ||
| Genes | 1972 | ||
| mRNA | 1972 | ||
| misc RNA | 30 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.3 % | ||
| CheckM Completeness | 97.88 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Streptococcus mutans PKUSS-HG0 |
| GenBank Assembly Accession | GCA_000496535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000496535.1 [NCBI] |
| BioSample | SAMN02469427 [NCBI] |
| BioProject | PRJNA219430 [NCBI] |
| Submitter | Beijing Institute of Genomics, Chinese Academy of Sciences |
| Submission Date | 2013-12-19T13:01:07.170 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AXSW01 |
| NCBI TaxID | 1403829 |
| Isolation Source | dental plaque |
| Geo Location | China: Beijing |
