Genome Meta Information: Streptococcus pseudopneumoniae 1321 (GCA_000506705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000506705.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae 1321 | ||
| Strain or Isolate | 1321 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 38 | ||
| Contigs |
|
||
| Total Sequence Length | 2,146,559 (bp) | ||
| GC Percentage | 39.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/506/705/GCA_000506705.1_Spspn.str1321_v1.0 | ||
| CDS | 2092 | ||
| Genes | 2211 | ||
| mRNA | 2211 | ||
| misc RNA | 72 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.5 % | ||
| CheckM Completeness | 97.26 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Spspn.str1321_v1.0 |
| GenBank Assembly Accession | GCA_000506705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000506705.1 [NCBI] |
| BioSample | SAMN02470847 [NCBI] |
| BioProject | PRJNA225870 [NCBI] |
| Submitter | Research Institute of Physical-Chemical Medicine, Moscow, Russia |
| Submission Date | 2013-12-19T13:25:18.477 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AYRP01 |
| NCBI TaxID | 1415760 |
| Isolation Source | nasopharynx from a pediatric patient |
| Geo Location | Russia |
