Taxon Table | Genome Table
Genome Meta Information:
Yersinia
pestis
NBRC 105692 (GCA_000511675.1)
| HOMD Genome-ID |
GCA_000511675.1
|
| HOMD Taxon-ID |
HMT-0827
|
| Species Name (in use by HOMD) |
Yersinia pestis
|
| Organism Name (as deposited) |
HMT-827 Yersinia pestis NBRC 105692
|
| Strain or Isolate |
NBRC 105692
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia;
s__Yersinia pestis |
| Sequencing Technology |
454 GS-FLX Titanium; Illumina HiSeq 1000
|
| Genome Coverage |
128
|
| Contigs |
Number of Contigs: 142
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
4,506,724 (bp) |
| GC Percentage |
47.41
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/511/675/GCA_000511675.1_ASM51167v1
|
| CDS |
3923
|
| Genes |
4134
|
| mRNA |
4134
|
| misc RNA |
146
|
| rRNA |
3
|
| tRNA |
61
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.99 %
|
| CheckM Completeness |
98.32 %
|
| CheckM Contamination |
0.76 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM51167v1
|
| GenBank Assembly Accession |
GCA_000511675.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000511675.1
[NCBI]
|
| BioSample |
SAMD00041801
[NCBI]
|
| BioProject |
PRJDB274
[NCBI]
|
| Submitter |
National Institute of Technology and Evaluation
|
| Submission Date |
2015-10-09T01:00:42.000
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
BAUR01
|
| NCBI TaxID |
1218101
|
| Isolation Source |
|
| Geo Location |
not applicable
|
