Genome Meta Information: Escherichia coli RM13516 (GCA_000520055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000520055.1 | ||
| HOMD Taxon-ID | HMT-0574 | ||
| Species Name (in use by HOMD) | Escherichia coli | ||
| Organism Name (as deposited) | HMT-574 Escherichia coli RM13516 | ||
| Strain or Isolate | RM13516 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; s__Escherichia coli |
||
| Sequencing Technology | 454; Illumina; PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 5,559,008 (bp) | ||
| GC Percentage | 50.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/520/055/GCA_000520055.1_ASM52005v1 | ||
| CDS | 5334 | ||
| Genes | 5744 | ||
| mRNA | 5744 | ||
| misc RNA | 286 | ||
| rRNA | 22 | ||
| tRNA | 101 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.41 % | ||
| CheckM Completeness | 98.85 % | ||
| CheckM Contamination | 0.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM52005v1 |
| GenBank Assembly Accession | GCA_000520055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000520055.1 [NCBI] |
| BioSample | SAMN02641384 [NCBI] |
| BioProject | PRJNA178650 [NCBI] |
| Submitter | USDA, ARS, WRRC, PSM |
| Submission Date | 2014-02-13T10:20:18.913 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1248915 |
| Isolation Source | feces |
| Geo Location | Belgium |
