Genome Meta Information: Staphylococcus lugdunensis UCIM6116 (GCA_000542395.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000542395.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis UCIM6116 | ||
| Strain or Isolate | UCIM6116 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 123 | ||
| Contigs |
|
||
| Total Sequence Length | 2,554,377 (bp) | ||
| GC Percentage | 33.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/542/395/GCA_000542395.1_Stap_lugd_UCIM6116_V1 | ||
| CDS | 2391 | ||
| Genes | 2517 | ||
| mRNA | 2517 | ||
| misc RNA | 83 | ||
| rRNA | 8 | ||
| tRNA | 34 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.45 % | ||
| CheckM Completeness | 97.69 % | ||
| CheckM Contamination | 0.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Stap_lugd_UCIM6116_V1 |
| GenBank Assembly Accession | GCA_000542395.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000542395.1 [NCBI] |
| BioSample | SAMN02381740 [NCBI] |
| BioProject | PRJNA224001 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-10-23T13:29:47.660 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JBHB01 |
| NCBI TaxID | 1409679 |
| Isolation Source | blood |
| Geo Location | USA: Irvine, CA |
