Genome Meta Information: Bifidobacterium scardovii LMG 21589 (GCA_000741405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000741405.1 | ||
| HOMD Taxon-ID | HMT-0891 | ||
| Species Name (in use by HOMD) | Bifidobacterium scardovii | ||
| Organism Name (as deposited) | HMT-891 Bifidobacterium scardovii LMG 21589 | ||
| Strain or Isolate | LMG 21589 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium scardovii |
||
| Sequencing Technology | Ion Torrent | ||
| Genome Coverage | 68.6 | ||
| Contigs |
|
||
| Total Sequence Length | 3,141,793 (bp) | ||
| GC Percentage | 64.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/405/GCA_000741405.1_Bifsca | ||
| CDS | 2531 | ||
| Genes | 2605 | ||
| mRNA | 2605 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.6 % | ||
| CheckM Contamination | 1.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Bifsca |
| GenBank Assembly Accession | GCA_000741405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000741405.1 [NCBI] |
| BioSample | SAMN02673452 [NCBI] |
| BioProject | PRJNA239864 [NCBI] |
| Submitter | University of Parma |
| Submission Date | 2014-03-05T15:00:55.040 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JGZO01 |
| NCBI TaxID | 158787 |
| Isolation Source | Human blood |
| Geo Location | missing |
