Genome Meta Information: Bifidobacterium animalis LMG 10508 (GCA_000741485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000741485.1 | ||
| HOMD Taxon-ID | HMT-0895 | ||
| Species Name (in use by HOMD) | Bifidobacterium animalis | ||
| Organism Name (as deposited) | HMT-895 Bifidobacterium animalis LMG 10508 | ||
| Strain or Isolate | LMG 10508 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium animalis |
||
| Sequencing Technology | Ion Torrent | ||
| Genome Coverage | 61.2 | ||
| Contigs |
|
||
| Total Sequence Length | 1,915,007 (bp) | ||
| GC Percentage | 60.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/741/485/GCA_000741485.1_Bifani_sub.ani | ||
| CDS | 1538 | ||
| Genes | 1605 | ||
| mRNA | 1605 | ||
| misc RNA | 8 | ||
| rRNA | 5 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 97.02 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Bifani_sub.ani |
| GenBank Assembly Accession | GCA_000741485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000741485.1 [NCBI] |
| BioSample | SAMN02673424 [NCBI] |
| BioProject | PRJNA239836 [NCBI] |
| Submitter | University of Parma |
| Submission Date | 2014-03-05T15:00:52.920 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JGYM01 |
| NCBI TaxID | 302912 |
| Isolation Source | Rat feces |
| Geo Location | missing |
