Genome Meta Information: Streptococcus sinensis HKU4 (GCA_000767835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000767835.1 | ||
| HOMD Taxon-ID | HMT-0767 | ||
| Species Name (in use by HOMD) | Streptococcus sinensis | ||
| Organism Name (as deposited) | HMT-767 Streptococcus sinensis HKU4 | ||
| Strain or Isolate | HKU4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sinensis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 10 | ||
| Contigs |
|
||
| Total Sequence Length | 2,061,843 (bp) | ||
| GC Percentage | 42.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/767/835/GCA_000767835.1_ASM76783v1 | ||
| CDS | 1938 | ||
| Genes | 2022 | ||
| mRNA | 2022 | ||
| misc RNA | 33 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.76 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM76783v1 |
| GenBank Assembly Accession | GCA_000767835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000767835.1 [NCBI] |
| BioSample | SAMN02848449 [NCBI] |
| BioProject | PRJNA251999 [NCBI] |
| Submitter | The University of Hong Kong |
| Submission Date | 2014-06-09T14:45:04.770 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JPEN01 |
| NCBI TaxID | 176090 |
| Isolation Source | blood culture of a patient with infective endocarditis |
| Geo Location | Hong Kong |
