Genome Meta Information: Streptococcus pneumoniae NT_110_58 (GCA_000817005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000817005.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae NT_110_58 | ||
| Strain or Isolate | NT_110_58 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | Pacific Biosciences | ||
| Genome Coverage | 137 | ||
| Contigs |
|
||
| Total Sequence Length | 2,287,774 (bp) | ||
| GC Percentage | 39.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/817/005/GCA_000817005.1_ASM81700v1 | ||
| CDS | 2246 | ||
| Genes | 2401 | ||
| mRNA | 2401 | ||
| misc RNA | 84 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.94 % | ||
| CheckM Completeness | 95 % | ||
| CheckM Contamination | 1.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM81700v1 |
| GenBank Assembly Accession | GCA_000817005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000817005.1 [NCBI] |
| BioSample | SAMN02725063 [NCBI] |
| BioProject | PRJNA244310 [NCBI] |
| Submitter | University of Bern |
| Submission Date | 2014-04-10T11:43:02.463 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1313 |
| Isolation Source | nasopharynx |
| Geo Location | Switzerland |
