Genome Meta Information: Yersinia pestis Angola (GCA_000834845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000834845.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis Angola | ||
| Strain or Isolate | Angola | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | Illumina; PacBio; 454 | ||
| Genome Coverage | 367 | ||
| Contigs |
|
||
| Total Sequence Length | 4,674,610 (bp) | ||
| GC Percentage | 47.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/834/845/GCA_000834845.1_ASM83484v1 | ||
| CDS | 4305 | ||
| Genes | 4675 | ||
| mRNA | 4675 | ||
| misc RNA | 279 | ||
| rRNA | 22 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.85 % | ||
| CheckM Completeness | 96.91 % | ||
| CheckM Contamination | 0.75 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM83484v1 |
| GenBank Assembly Accession | GCA_000834845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000834845.1 [NCBI] |
| BioSample | SAMN03177051 [NCBI] |
| BioProject | PRJNA240101 [NCBI] |
| Submitter | Los Alamos National Laboratory |
| Submission Date | 2014-11-12T13:42:33.320 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 349746 |
| Isolation Source | Unknown |
| Geo Location | Unknown |
