Genome Meta Information: Streptococcus infantis UC921A (GCA_000960085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000960085.1 | ||
| HOMD Taxon-ID | HMT-0444 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-444 Streptococcus infantis clade-444 UC921A | ||
| Strain or Isolate | UC921A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_C |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,791,991 (bp) | ||
| GC Percentage | 39.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/960/085/GCA_000960085.1_ASM96008v1 | ||
| CDS | 1758 | ||
| Genes | 1878 | ||
| mRNA | 0 | ||
| misc RNA | 37 | ||
| rRNA | 13 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 90.71 % | ||
| CheckM Completeness | 97.99 % | ||
| CheckM Contamination | 2.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM96008v1 |
| GenBank Assembly Accession | GCA_000960085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000960085.1 [NCBI] |
| BioSample | SAMN03334903 [NCBI] |
| BioProject | PRJNA274768 [NCBI] |
| Submitter | University at Buffalo |
| Submission Date | 2015-02-09T16:38:46.377 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JYGT01 |
| NCBI TaxID | 68892 |
| Isolation Source | oral cavity |
| Geo Location | USA: New York, Buffalo |
