Genome Meta Information: Streptococcus salivarius UC3162 (GCA_000963265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000963265.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius UC3162 | ||
| Strain or Isolate | UC3162 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_D |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,164,807 (bp) | ||
| GC Percentage | 40.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/963/265/GCA_000963265.1_ASM96326v1 | ||
| CDS | 1938 | ||
| Genes | 2076 | ||
| mRNA | 2076 | ||
| misc RNA | 41 | ||
| rRNA | 26 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.93 % | ||
| CheckM Completeness | 98.37 % | ||
| CheckM Contamination | 0.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM96326v1 |
| GenBank Assembly Accession | GCA_000963265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000963265.1 [NCBI] |
| BioSample | SAMN03334908 [NCBI] |
| BioProject | PRJNA274768 [NCBI] |
| Submitter | University at Buffalo |
| Submission Date | 2015-02-09T16:38:48.170 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JYOY01 |
| NCBI TaxID | 1304 |
| Isolation Source | oral cavity |
| Geo Location | USA: New York, Buffalo |
