Genome Meta Information: Cronobacter sakazakii ATCC 29544 (GCA_000982825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000982825.1 | ||
| HOMD Taxon-ID | HMT-0753 | ||
| Species Name (in use by HOMD) | Cronobacter sakazakii | ||
| Organism Name (as deposited) | HMT-753 Cronobacter sakazakii ATCC 29544 | ||
| Strain or Isolate | ATCC 29544 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter; s__Cronobacter sakazakii |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 73 | ||
| Contigs |
|
||
| Total Sequence Length | 4,663,565 (bp) | ||
| GC Percentage | 56.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/982/825/GCA_000982825.1_ASM98282v1 | ||
| CDS | 4428 | ||
| Genes | 4656 | ||
| mRNA | 4656 | ||
| misc RNA | 121 | ||
| rRNA | 22 | ||
| tRNA | 84 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.17 % | ||
| CheckM Contamination | 2.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM98282v1 |
| GenBank Assembly Accession | GCA_000982825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000982825.1 [NCBI] |
| BioSample | SAMN03371468 [NCBI] |
| BioProject | PRJNA276173 [NCBI] |
| Submitter | Food-borne Pathogen Omics Research Center |
| Submission Date | 2015-02-24T04:39:12.843 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28141 |
| Isolation Source | primary hospital lab |
| Geo Location | USA:Tennessee |
