Taxon Table | Genome Table
Genome Meta Information:
Corynebacterium
otitidis
TD1 (GCA_000988215.1)
| HOMD Genome-ID |
GCA_000988215.1
|
| HOMD Taxon-ID |
HMT-0832
|
| Species Name (in use by HOMD) |
Corynebacterium otitidis
|
| Organism Name (as deposited) |
HMT-832 Corynebacterium otitidis TD1
|
| Strain or Isolate |
TD1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;
s__Corynebacterium otitidis |
| Sequencing Technology |
Nextera paired-end; Illumina
|
| Genome Coverage |
50
|
| Contigs |
Number of Contigs: 148
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,144,430 (bp) |
| GC Percentage |
71.28
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/988/215/GCA_000988215.1_ASM98821v1
|
| CDS |
1865
|
| Genes |
1936
|
| mRNA |
1936
|
| misc RNA |
8
|
| rRNA |
2
|
| tRNA |
60
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.74 %
|
| CheckM Completeness |
96.42 %
|
| CheckM Contamination |
0.91 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM98821v1
|
| GenBank Assembly Accession |
GCA_000988215.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000988215.1
[NCBI]
|
| BioSample |
SAMN03573806
[NCBI]
|
| BioProject |
PRJNA282675
[NCBI]
|
| Submitter |
CDPH
|
| Submission Date |
2015-04-29T13:41:08.000
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
LBNF01
|
| NCBI TaxID |
29321
|
| Isolation Source |
central line catheter tip culture
|
| Geo Location |
USA: Richmond
|
