Genome Meta Information: Streptococcus pyogenes AP1 (GCA_000993765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000993765.1 | ||
| HOMD Taxon-ID | HMT-0745 | ||
| Species Name (in use by HOMD) | Streptococcus pyogenes | ||
| Organism Name (as deposited) | HMT-745 Streptococcus pyogenes AP1 | ||
| Strain or Isolate | AP1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pyogenes |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 238 | ||
| Contigs |
|
||
| Total Sequence Length | 1,908,294 (bp) | ||
| GC Percentage | 38.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/993/765/GCA_000993765.1_ASM99376v1 | ||
| CDS | 1889 | ||
| Genes | 2012 | ||
| mRNA | 2012 | ||
| misc RNA | 50 | ||
| rRNA | 15 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.57 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM99376v1 |
| GenBank Assembly Accession | GCA_000993765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000993765.1 [NCBI] |
| BioSample | SAMN02716635 [NCBI] |
| BioProject | PRJNA242701 [NCBI] |
| Submitter | COMBACTE |
| Submission Date | 2014-04-03T07:39:11.030 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1314 |
| Isolation Source | blood |
| Geo Location | Czech Republic:Prague |
