Genome Meta Information: Bifidobacterium dentium JCM 1195 (GCA_001042595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001042595.1 | ||
| HOMD Taxon-ID | HMT-0588 | ||
| Species Name (in use by HOMD) | Bifidobacterium dentium | ||
| Organism Name (as deposited) | HMT-588 Bifidobacterium dentium JCM 1195 | ||
| Strain or Isolate | JCM 1195 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium dentium |
||
| Sequencing Technology | 3730xl | ||
| Genome Coverage | 9.3 | ||
| Contigs |
|
||
| Total Sequence Length | 2,635,669 (bp) | ||
| GC Percentage | 58.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/595/GCA_001042595.1_ASM104259v1 | ||
| CDS | 2137 | ||
| Genes | 2212 | ||
| mRNA | 2212 | ||
| misc RNA | 9 | ||
| rRNA | 9 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.91 % | ||
| CheckM Contamination | 0.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104259v1 |
| GenBank Assembly Accession | GCA_001042595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001042595.1 [NCBI] |
| BioSample | SAMD00061043 [NCBI] |
| BioProject | PRJDB59 [NCBI] |
| Submitter | Graduate School of Frontier Sciences, University of Tokyo |
| Submission Date | 2016-09-28T01:02:01.170 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1150423 |
| Isolation Source | |
| Geo Location | |
