Genome Meta Information: Bifidobacterium scardovii JCM 12489 (GCA_001042635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001042635.1 | ||
| HOMD Taxon-ID | HMT-0891 | ||
| Species Name (in use by HOMD) | Bifidobacterium scardovii | ||
| Organism Name (as deposited) | HMT-891 Bifidobacterium scardovii JCM 12489 | ||
| Strain or Isolate | JCM 12489 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium scardovii |
||
| Sequencing Technology | 3730xl; 454FLX | ||
| Genome Coverage | 37.8 | ||
| Contigs |
|
||
| Total Sequence Length | 3,158,347 (bp) | ||
| GC Percentage | 64.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/042/635/GCA_001042635.1_ASM104263v1 | ||
| CDS | 2528 | ||
| Genes | 2606 | ||
| mRNA | 2606 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.61 % | ||
| CheckM Contamination | 1.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM104263v1 |
| GenBank Assembly Accession | GCA_001042635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001042635.1 [NCBI] |
| BioSample | SAMD00061046 [NCBI] |
| BioProject | PRJDB62 [NCBI] |
| Submitter | Graduate School of Frontier Sciences, University of Tokyo |
| Submission Date | 2016-09-28T01:02:03.163 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1150461 |
| Isolation Source | |
| Geo Location | |
