Genome Meta Information: Alloscardovia omnicolens 350_GVAG (GCA_001056455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001056455.1 | ||
| HOMD Taxon-ID | HMT-198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens 350_GVAG | ||
| Strain or Isolate | 350_GVAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 12.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,875,004 (bp) | ||
| GC Percentage | 46.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/056/455/GCA_001056455.1_ASM105645v1 | ||
| CDS | 1581 | ||
| Genes | 1644 | ||
| mRNA | 1644 | ||
| misc RNA | 9 | ||
| rRNA | 8 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.79 % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 96.65 % | ||
| CheckM2 Contamination | 0.07 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM105645v1 |
| GenBank Assembly Accession | GCA_001056455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001056455.1 [NCBI] |
| BioSample | SAMN03197541 [NCBI] |
| BioProject | PRJNA267549 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2014-11-17T11:41:07.677 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JVKN01 |
| NCBI TaxID | 419015 |
| Isolation Source | missing |
| Geo Location | USA: WA |
