Genome Meta Information: Aggregatibacter sp. HMT-513 933_AAPH (GCA_001059425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001059425.1 | ||
| HOMD Taxon-ID | HMT-513 | ||
| Species Name (in use by HOMD) | Aggregatibacter sp. HMT-513 | ||
| Organism Name (as deposited) | HMT-513 Aggregatibacter sp. HMT-513 933_AAPH | ||
| Strain or Isolate | 933_AAPH | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter segnis_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 18.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,934,895 (bp) | ||
| GC Percentage | 42.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/059/425/GCA_001059425.1_ASM105942v1 | ||
| CDS | 1780 | ||
| Genes | 1858 | ||
| mRNA | 1858 | ||
| misc RNA | 30 | ||
| rRNA | 14 | ||
| tRNA | 33 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.89 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.01 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM105942v1 |
| GenBank Assembly Accession | GCA_001059425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001059425.1 [NCBI] |
| BioSample | SAMN03198152 [NCBI] |
| BioProject | PRJNA267549 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2014-11-17T11:41:46.387 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JUNA01 |
| NCBI TaxID | 739 |
| Isolation Source | missing |
| Geo Location | USA: WA |
