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Genome Meta Information:
Rothia
mucilaginosa
328_RMUC (GCA_001064575.1)
| HOMD Genome-ID |
GCA_001064575.1
|
| HOMD Taxon-ID |
HMT-681
|
| Species Name (in use by HOMD) |
Rothia mucilaginosa
|
| Organism Name (as deposited) |
HMT-681 Rothia mucilaginosa clade-681 328_RMUC
|
| Strain or Isolate |
328_RMUC
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia sp001808955 |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
11.0x
|
| Contigs |
Number of Contigs: 224
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,337,099 (bp) |
| GC Percentage |
59.53
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/064/575/GCA_001064575.1_ASM106457v1
|
| CDS |
1824
|
| Genes |
1881
|
| mRNA |
1881
|
| misc RNA |
12
|
| rRNA |
2
|
| tRNA |
42
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
94.57 %
|
| CheckM Completeness |
99.33 %
|
| CheckM Contamination |
0.67 %
|
| CheckM2 Completeness |
99.98 %
|
| CheckM2 Contamination |
0.06 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM106457v1
|
| GenBank Assembly Accession |
GCA_001064575.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001064575.1
[NCBI]
|
| BioSample |
SAMN03197517
[NCBI]
|
| BioProject |
PRJNA267549
[NCBI]
|
| Submitter |
University of Washington
|
| Submission Date |
2014-11-17T11:40:51.327
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JVLL01
|
| NCBI TaxID |
43675
|
| Isolation Source |
missing
|
| Geo Location |
USA: WA
|
