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Genome Meta Information:
Rothia
mucilaginosa
788_RMUC (GCA_001067345.1)
| HOMD Genome-ID |
GCA_001067345.1
|
| HOMD Taxon-ID |
HMT-681
|
| Species Name (in use by HOMD) |
Rothia mucilaginosa
|
| Organism Name (as deposited) |
HMT-681 Rothia mucilaginosa clade-681 788_RMUC
|
| Strain or Isolate |
788_RMUC
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia sp001808955 |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
19.0x
|
| Contigs |
Number of Contigs: 237
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,257,570 (bp) |
| GC Percentage |
59.64
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/067/345/GCA_001067345.1_ASM106734v1
|
| CDS |
1763
|
| Genes |
1817
|
| mRNA |
1817
|
| misc RNA |
13
|
| rRNA |
2
|
| tRNA |
38
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
94.22 %
|
| CheckM Completeness |
99.33 %
|
| CheckM Contamination |
1 %
|
| CheckM2 Completeness |
100 %
|
| CheckM2 Contamination |
1.11 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM106734v1
|
| GenBank Assembly Accession |
GCA_001067345.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001067345.1
[NCBI]
|
| BioSample |
SAMN03197999
[NCBI]
|
| BioProject |
PRJNA267549
[NCBI]
|
| Submitter |
University of Washington
|
| Submission Date |
2014-11-17T11:41:36.393
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JUSX01
|
| NCBI TaxID |
43675
|
| Isolation Source |
missing
|
| Geo Location |
USA: WA
|
