Genome Meta Information: Aggregatibacter aphrophilus NJ8700 (GCA_001188835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001188835.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus NJ8700 | ||
| Strain or Isolate | NJ8700 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 26.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,313,256 (bp) | ||
| GC Percentage | 42.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/188/835/GCA_001188835.1_ASM118883v1 | ||
| CDS | 2156 | ||
| Genes | 2288 | ||
| mRNA | 2288 | ||
| misc RNA | 54 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.9 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.04 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.07 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM118883v1 |
| GenBank Assembly Accession | GCA_001188835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001188835.1 [NCBI] |
| BioSample | SAMN02988840 [NCBI] |
| BioProject | PRJNA258126 [NCBI] |
| Submitter | Bumgarner laboratory, Department of Microbiology, University of Washington |
| Submission Date | 2014-08-13T08:30:35.837 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 634176 |
| Isolation Source | An oral isolate from a healthy individual |
| Geo Location | USA |
