Genome Meta Information: Aggregatibacter actinomycetemcomitans RHAA1 (GCA_001190115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001190115.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans RHAA1 | ||
| Strain or Isolate | RHAA1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans_A |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 29.9x | ||
| Contigs |
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| Total Sequence Length | 2,233,070 (bp) | ||
| GC Percentage | 44.67 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/190/115/GCA_001190115.1_ASM119011v1 | ||
| CDS | 2143 | ||
| Genes | 2258 | ||
| mRNA | 2258 | ||
| misc RNA | 68 | ||
| rRNA | 1 | ||
| tRNA | 46 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 93.91 % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.54 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM119011v1 |
| GenBank Assembly Accession | GCA_001190115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001190115.1 [NCBI] |
| BioSample | SAMN02988815 [NCBI] |
| BioProject | PRJNA258125 [NCBI] |
| Submitter | Bumgarner laboratory, Department of Microbiology, University of Washington |
| Submission Date | 2014-08-13T08:25:04.280 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JPZI01 |
| NCBI TaxID | 1089447 |
| Isolation Source | Unspecified |
| Geo Location | USA |
