Genome Meta Information: Capnocytophaga ochracea F0383 (GCA_001278825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001278825.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea F0383 | ||
| Strain or Isolate | F0383 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 211 | ||
| Contigs |
|
||
| Total Sequence Length | 2,614,527 (bp) | ||
| GC Percentage | 39.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/278/825/GCA_001278825.1_ASM127882v1 | ||
| CDS | 2232 | ||
| Genes | 2300 | ||
| mRNA | 2300 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.52 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM127882v1 |
| GenBank Assembly Accession | GCA_001278825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001278825.1 [NCBI] |
| BioSample | SAMN04009744 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2015-08-24T20:13:28.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1705617 |
| Isolation Source | Supragingival dental plaque, molar tooth |
| Geo Location | USA: Boston, MA |
