Genome Meta Information: Streptococcus intermedius KCOM 1545 (GCA_001296205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001296205.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius KCOM 1545 | ||
| Strain or Isolate | KCOM 1545 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1331 | ||
| Contigs |
|
||
| Total Sequence Length | 1,908,201 (bp) | ||
| GC Percentage | 37.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/296/205/GCA_001296205.1_ASM129620v1 | ||
| CDS | 1835 | ||
| Genes | 1910 | ||
| mRNA | 1910 | ||
| misc RNA | 36 | ||
| rRNA | 6 | ||
| tRNA | 32 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.33 % | ||
| CheckM Completeness | 95.31 % | ||
| CheckM Contamination | 3.89 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM129620v1 |
| GenBank Assembly Accession | GCA_001296205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN03263087 [NCBI] |
| BioProject | PRJNA270135 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2014-12-11T22:21:18.527 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1338 |
| Isolation Source | |
| Geo Location | South Korea: Gwangju |
