Genome Meta Information: Streptococcus pseudopneumoniae type strain: N (GCA_001336595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001336595.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae type strain | ||
| Strain or Isolate | type strain: N | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | SLX | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,091,536 (bp) | ||
| GC Percentage | 39.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/336/595/GCA_001336595.1_6259_5_22 | ||
| CDS | 2035 | ||
| Genes | 2140 | ||
| mRNA | 2140 | ||
| misc RNA | 64 | ||
| rRNA | 4 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.12 % | ||
| CheckM Completeness | 97.95 % | ||
| CheckM Contamination | 1.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 6259_5#22 |
| GenBank Assembly Accession | GCA_001336595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001336595.1 [NCBI] |
| BioSample | SAMEA974647 [NCBI] |
| BioProject | PRJEB2357 [NCBI] |
| Submitter | SC |
| Submission Date | 2011-07-31T19:54:54.193 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | CGVP01 |
| NCBI TaxID | 257758 |
| Isolation Source | nasopharynx |
| Geo Location | Thailand: Maela |
