Genome Meta Information: Stenotrophomonas nitritireducens Leaf70 (GCA_001422025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001422025.1 | ||
| HOMD Taxon-ID | HMT-0037 | ||
| Species Name (in use by HOMD) | Stenotrophomonas nitritireducens | ||
| Organism Name (as deposited) | HMT-037 Stenotrophomonas nitritireducens Leaf70 | ||
| Strain or Isolate | Leaf70 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas; s__Stenotrophomonas nitritireducens |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 4,032,657 (bp) | ||
| GC Percentage | 68.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/422/025/GCA_001422025.1_Leaf70 | ||
| CDS | 3502 | ||
| Genes | 3696 | ||
| mRNA | 3696 | ||
| misc RNA | 128 | ||
| rRNA | 3 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 89.63 % | ||
| CheckM Contamination | 4.97 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Leaf70 |
| GenBank Assembly Accession | GCA_001422025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001422025.1 [NCBI] |
| BioSample | SAMN04151613 [NCBI] |
| BioProject | PRJNA297956 [NCBI] |
| Submitter | Max Planck Institute for Plant Breeding Research |
| Submission Date | 2015-10-07T09:29:21.000 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LMLT01 |
| NCBI TaxID | 1736233 |
| Isolation Source | |
| Geo Location | Switzerland:Zurich |
