Genome Meta Information: Stenotrophomonas nitritireducens DSM 12575 (GCA_001431425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001431425.1 | ||
| HOMD Taxon-ID | HMT-0037 | ||
| Species Name (in use by HOMD) | Stenotrophomonas nitritireducens | ||
| Organism Name (as deposited) | HMT-037 Stenotrophomonas nitritireducens DSM 12575 | ||
| Strain or Isolate | DSM 12575 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas; s__Stenotrophomonas nitritireducens |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 141 | ||
| Contigs |
|
||
| Total Sequence Length | 3,983,487 (bp) | ||
| GC Percentage | 68.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/431/425/GCA_001431425.1_ASM143142v1 | ||
| CDS | 3458 | ||
| Genes | 3643 | ||
| mRNA | 3643 | ||
| misc RNA | 122 | ||
| rRNA | 3 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 86.24 % | ||
| CheckM Contamination | 5.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143142v1 |
| GenBank Assembly Accession | GCA_001431425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001431425.1 [NCBI] |
| BioSample | SAMN03701629 [NCBI] |
| BioProject | PRJNA284361 [NCBI] |
| Submitter | CSIR-Institute of Microbial Technology |
| Submission Date | 2015-05-19T10:37:08.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LDJG01 |
| NCBI TaxID | 83617 |
| Isolation Source | Laboratory scale biofilters supplied with ammonia or dimethyl disulfide and ammo |
| Geo Location | Germany |
