Genome Meta Information: Fusobacterium polymorphum ChDC F306 (GCA_001433955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001433955.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum ChDC F306 | ||
| Strain or Isolate | ChDC F306 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1331 | ||
| Contigs |
|
||
| Total Sequence Length | 2,622,370 (bp) | ||
| GC Percentage | 26.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/955/GCA_001433955.1_ASM143395v1 | ||
| CDS | 2498 | ||
| Genes | 2585 | ||
| mRNA | 2585 | ||
| misc RNA | 26 | ||
| rRNA | 13 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.9 % | ||
| CheckM Completeness | 99.68 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143395v1 |
| GenBank Assembly Accession | GCA_001433955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001433955.1 [NCBI] |
| BioSample | SAMN03263152 [NCBI] |
| BioProject | PRJNA270146 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2014-12-12T00:21:33.540 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 76857 |
| Isolation Source | subgingival dental plaque |
| Geo Location | South Korea: Gwangju |
