Genome Meta Information: Streptococcus salivarius JF (GCA_001543085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001543085.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius JF | ||
| Strain or Isolate | JF | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,191,044 (bp) | ||
| GC Percentage | 40.19 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/543/085/GCA_001543085.1_ASM154308v1 | ||
| CDS | 1987 | ||
| Genes | 2132 | ||
| mRNA | 2132 | ||
| misc RNA | 31 | ||
| rRNA | 23 | ||
| tRNA | 91 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 94.75 % | ||
| CheckM Contamination | 0.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM154308v1 |
| GenBank Assembly Accession | GCA_001543085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001543085.1 [NCBI] |
| BioSample | SAMN04395122 [NCBI] |
| BioProject | PRJNA308383 [NCBI] |
| Submitter | Xintai People Hospital |
| Submission Date | 2016-01-11T01:49:02.560 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1304 |
| Isolation Source | oral |
| Geo Location | China: Xintai |
