Genome Meta Information: Aerococcus viridans CCUG4311 (GCA_001543285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001543285.1 | ||
| HOMD Taxon-ID | HMT-312 | ||
| Species Name (in use by HOMD) | Aerococcus viridans | ||
| Organism Name (as deposited) | HMT-312 Aerococcus viridans CCUG4311 | ||
| Strain or Isolate | CCUG4311 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus; s__Aerococcus viridans |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 486.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,199,877 (bp) | ||
| GC Percentage | 39.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/543/285/GCA_001543285.1_ASM154328v1 | ||
| CDS | 2006 | ||
| Genes | 2121 | ||
| mRNA | 2121 | ||
| misc RNA | 37 | ||
| rRNA | 21 | ||
| tRNA | 55 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.9 % | ||
| CheckM Contamination | 1.65 % | ||
| CheckM2 Completeness | 99.96 % | ||
| CheckM2 Contamination | 0.8 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM154328v1 |
| GenBank Assembly Accession | GCA_001543285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001543285.1 [NCBI] |
| BioSample | SAMN04419116 [NCBI] |
| BioProject | PRJNA308559 [NCBI] |
| Submitter | Slagelse Hospital |
| Submission Date | 2016-01-16T13:34:04.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1377 |
| Isolation Source | Air sample |
| Geo Location | United Kingdom: London |
