Genome Meta Information: Aggregatibacter actinomycetemcomitans NUM 4039 (GCA_001547775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001547775.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans NUM 4039 | ||
| Strain or Isolate | NUM 4039 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | 454 GS FLX; ABI 3730 | ||
| Genome Coverage | 18.0x | ||
| Contigs |
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| Total Sequence Length | 2,382,853 (bp) | ||
| GC Percentage | 44.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/775/GCA_001547775.1_ASM154777v1 | ||
| CDS | 2348 | ||
| Genes | 2512 | ||
| mRNA | 2512 | ||
| misc RNA | 90 | ||
| rRNA | 19 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.78 % | ||
| CheckM Completeness | 99.45 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.65 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM154777v1 |
| GenBank Assembly Accession | GCA_001547775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001547775.1 [NCBI] |
| BioSample | SAMD00061020 [NCBI] |
| BioProject | PRJDB1482 [NCBI] |
| Submitter | Nihon University School of Dentistry at Matsudo |
| Submission Date | 2016-09-28T01:01:45.171 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1407647 |
| Isolation Source | |
| Geo Location | |
