Genome Meta Information: Veillonella sp. HMT-780 DNF00869 (GCA_001553345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553345.1 | ||
| HOMD Taxon-ID | HMT-0780 | ||
| Species Name (in use by HOMD) | Veillonella sp. HMT-780 | ||
| Organism Name (as deposited) | HMT-780 Veillonella sp. HMT-780 DNF00869 | ||
| Strain or Isolate | DNF00869 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422; s__F0422 sp001553345 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 164 | ||
| Contigs |
|
||
| Total Sequence Length | 1,664,293 (bp) | ||
| GC Percentage | 39.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/345/GCA_001553345.1_ASM155334v1 | ||
| CDS | 1460 | ||
| Genes | 1519 | ||
| mRNA | 1519 | ||
| misc RNA | 21 | ||
| rRNA | 2 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.03 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155334v1 |
| GenBank Assembly Accession | GCA_001553345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553345.1 [NCBI] |
| BioSample | SAMN04324904 [NCBI] |
| BioProject | PRJNA257378 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2015-12-08T08:06:06.657 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LSDQ01 |
| NCBI TaxID | 1384081 |
| Isolation Source | vagina |
| Geo Location | |
