Genome Meta Information: Leptotrichia sp. HMT-847 F0260 (GCA_001553645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553645.1 | ||
| HOMD Taxon-ID | HMT-0847 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-847 | ||
| Organism Name (as deposited) | HMT-847 Leptotrichia sp. HMT-847 F0260 | ||
| Strain or Isolate | F0260 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia sp001553645 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 138 | ||
| Contigs |
|
||
| Total Sequence Length | 2,194,935 (bp) | ||
| GC Percentage | 29.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/645/GCA_001553645.1_ASM155364v1 | ||
| CDS | 2074 | ||
| Genes | 2145 | ||
| mRNA | 2145 | ||
| misc RNA | 12 | ||
| rRNA | 15 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 93.04 % | ||
| CheckM Contamination | 1.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155364v1 |
| GenBank Assembly Accession | GCA_001553645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553645.1 [NCBI] |
| BioSample | SAMN04435855 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-01-22T19:16:03.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1785996 |
| Isolation Source | Subgingival plaque, periodontal pocket |
| Geo Location | USA: Blacksberg, VA |
