Genome Meta Information: Streptococcus infantis F0610 (5-114) (GCA_001553685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553685.1 | ||
| HOMD Taxon-ID | HMT-0431 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-431 Streptococcus infantis clade-431 F0610 (5-114) | ||
| Strain or Isolate | F0610 (5-114) | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp001553685 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 249 | ||
| Contigs |
|
||
| Total Sequence Length | 2,177,905 (bp) | ||
| GC Percentage | 39.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/685/GCA_001553685.1_ASM155368v1 | ||
| CDS | 2003 | ||
| Genes | 2126 | ||
| mRNA | 2126 | ||
| misc RNA | 48 | ||
| rRNA | 12 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155368v1 |
| GenBank Assembly Accession | GCA_001553685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553685.1 [NCBI] |
| BioSample | SAMN04435859 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-01-22T19:16:04.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712633 |
| Isolation Source | enamel chip carried in mandibular vestibule |
| Geo Location | USA: Bethesda, MD |
